Overview

Medical earnings are complicated. We unwind them.

Accountants for doctors and GPs separate NHS employment income, NHS pension input, partnership profit share and private practice earnings, then test each against the annual allowance before the tax return is filed. Most medical tax problems are pension problems that surface two years late, once the scheme statement finally arrives.

Doctors, GPs and consultants have some of the most complex tax positions of any professional group. The combination of NHS Pension Scheme (with its annual allowance interactions and lifetime allowance history), private practice income, locum work, consultant fees and education income, often all from one taxpayer, creates real planning complexity. The wrong approach can trigger £40k+ of avoidable tax in a single year.

We work with GP partners (in practices and groups), salaried GPs, locum doctors (limited company or sole trader), consultants in private practice, registrars and SHOs, and consultant-led private medical companies. The scope varies by structure but the core disciplines are the same: clean income capture, NHS Pension reconciliation, annual-allowance modelling, private-fee accounting, and Self-Assessment.

NHS Pension Scheme administration is particularly material. Annual Allowance tapering can affect higher-earning consultants where adjusted income exceeds £260k, with significant tax consequences if not managed. We track NHS pension growth alongside private contributions and model the tax consequences before pension input amounts are crystallised.

What we handle

Doctor / consultant-specific scope.

Sector knowledge that actually saves tax.

  • NHS Pension Scheme reconciliationAnnual statements reviewed. Pension input amounts reconciled. Growth tracked alongside other contributions.
  • Annual Allowance & taperingFor higher earners. Tapered Annual Allowance calculated. Carry-forward of unused allowance modelled. Tax-charge mitigation planned.
  • Private practice bookkeeping Private fee income captured. Medico-legal work tracked separately. Lab fees, secretarial and admin costs properly allocated.
  • Locum company accounting For locum doctors operating via a limited company. IR35 status determined. Optimal extraction strategy modelled.
  • Consultant fee structuring Independent contractor vs employment status. Insurance recovery handled correctly. VAT exempt-supply position.
  • GP practice accounting For partnerships, both partnership accounts and individual partner returns. Practice payments split correctly.
  • Annual Self-AssessmentSA100 with the relevant supplementary pages. Pension annual-allowance charge calculation where applicable. Private-practice income captured.
  • Tax-efficient extraction Salary, dividend, pension contribution strategy modelled. Family-member shareholdings considered where structurally appropriate.
Pensions first, tax second

Why does the annual allowance charge keep surprising doctors?

The NHS scheme is a defined benefit arrangement, so the amount tested against the annual allowance is not what the doctor paid in. It is the growth in the promised pension, converted to a notional capital figure. A pay rise, a partnership profit spike, or moving between the 1995, 2008 and 2015 sections can push that growth well past the standard 60,000 pound allowance in a single year, and the statement confirming it typically arrives long after the tax return was due. That timing gap, not the rate, is what generates the penalties.

Adjusted income above 260,000 pounds tapers the allowance further, down to a floor of 10,000 pounds, and consultants with private practice on top of a substantive contract cross that line more often than they expect. Where a charge is unavoidable, Scheme Pays lets the pension itself settle it in exchange for a reduction in benefits, but the election has its own deadline and its own arithmetic. We model the charge, the Scheme Pays cost and the alternative of paying personally before the election is made, using the member statement from NHS Pensions rather than an estimate.

Locum and private work brings a second question. Since April 2021 medium and large clients issue the status determination under the off-payroll working rules, which covers most NHS trusts, while smaller private clinics leave the decision with the doctor's own company. VAT is the third: healthcare supplied by a registered practitioner for the protection or restoration of health is exempt, but medico-legal reporting, cosmetic work without a therapeutic purpose and expert witness fees generally are not, and a consultant can drift over the 90,000 pound registration threshold on the taxable slice alone. The personal return itself is handled through our Self-Assessment filing service, and dental principals face a parallel set of issues on our dental practice accountants page. Locum work through a limited company brings the off-payroll rules into play, and our IR35 guide for contractors covers how each engagement should be assessed and documented. Private practice run through a limited company brings statutory filings with it, which sit with our outsourced company secretary service. The full range is listed in our directory of accounting, tax and advisory services.

"Eight years of mismanaged annual allowance charges from my previous accountant. We surfaced £62k of carry-forward I hadn't used. The Accountaire team are the only ones I've found who understand NHS pension complexity."
C
Consultant cardiologistNHS + private practice · London
By role

Which structure each medical role uses, and what it triggers

Most medical tax problems are pension problems that surface two years late, once the scheme statement finally arrives.

Which structure each medical role uses, and what it triggers
RoleUsual structureRecurring filingsThe pension question to settle first
GP partnerA share in a partnership or LLPPartnership return, plus a personal Self-Assessment returnProfit share drives the pension input amount, which is not known until the certificate goes in
Salaried GPEmploymentSelf-Assessment where there is other incomePension input from the employment, added to any private contributions
Locum doctorA limited company, or a sole tradeCompany accounts and Corporation Tax, or Self-AssessmentWhether the work is pensionable, and whether the locum forms were submitted in time
Consultant with private practiceEmployment plus a sole trade or a companySelf-Assessment, plus company filings where one existsThe annual allowance measured across the NHS scheme and private contributions together
Medico-legal workUsually inside the existing private practice structureThe same as the private practiceWhether the extra income tips adjusted income over the tapering threshold
Registrar or SHOEmploymentSelf-Assessment only where other income existsScheme membership continuity across rotations
Why us

Why doctors choose us.

Specialist tax expertise for medical earners.

01

NHS Pension Scheme expert

Annual allowance, tapering, carry-forward: all modelled correctly.

02

Consultant practice savvy

Private-fee, insurance recovery, medico-legal work all handled.

03

Locum company specialist

IR35 determination and extraction strategy modelled.

04

Mid-year tax planning

Not just an annual return, quarterly check-ins where high earners need them.

What accountants for doctors and GPs hear first.

Can you handle NHS Pension Scheme annual allowance issues?
Yes: annual allowance, tapered annual allowance for higher earners, carry-forward of unused allowance, scheme-pays election decisions. We model the specific tax position before pension growth crystallises so decisions can be made proactively.
I'm a locum doctor. Should I use a limited company?
Depends on income, IR35 risk and your client mix. Most genuinely-self-employed locums working for varied trusts benefit from limited company structure. Locums working substantially for one trust may face IR35 challenges. We assess each contract.
What's the IR35 position for locum doctors?
NHS trusts make IR35 determinations on locum arrangements. Where the engagement is deemed inside IR35, the trust deducts PAYE/NI at source. Where outside IR35, payment is gross and the limited company manages tax. We help structure contracts and trust relationships defensibly.
How does private practice VAT work for doctors?
Healthcare services provided by registered medical practitioners are VAT-exempt. Medico-legal services (preparing reports, expert witness work) are typically standard-rated. We apply the correct treatment per fee.
Can you handle GP partnership accounts?
Profit is split on the basis written into the partnership deed, after prior shares such as seniority and notional rent, and anyone joining or leaving part way through takes a time-apportioned slice. Each partner's pension certificate then has to agree with that split. One late certificate holds up several personal returns at once.
What about consultant private-practice incorporation?
For consultants with substantial private practice (typically £80k+ annual), incorporation can save material tax. We model the specific numbers and handle the conversion, including the goodwill, asset transfer and ongoing extraction strategy.
Recommended services

Usually taken alongside.

INDUSTRY

Dental clinics

Similar specialist scope for dental practices.

Explore
COMPLIANCE

Self-assessment

Personal return with NHS pension and private income.

Explore
SETUP

Company incorporation

For consultant practice incorporations.

Explore
MARKET

UK accounting and HMRC compliance

The UK filing calendar your practice income sits inside.

Explore
ADVISORY

Advisory for GP partnerships

Partnership drawings, capital accounts and profit share modelling.

Explore
For doctors

Want a tax adviser who understands medicine?

Thirty minutes to review your NHS pension, private practice and tax position.